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Publications
GEM Team's publications
HAL publications access
Journal articles
Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures
Ricardo Alves, Melina Kerou, Anna Zappe, Romana Bittner, Sophie S. Abby, Heiko Schmidt, Kevin Pfeifer, Christa Schleper
Frontiers in Microbiology, 2019, 10, ⟨10.3389/fmicb.2019.01571⟩. ⟨hal-02313925⟩
Journal articles
Vanillic Acid Restores Coenzyme Q Biosynthesis and ATP Production in Human Cells Lacking COQ6
Manuel Acosta Lopez, Eva Trevisson, Marcella Canton, Luis Vazquez-Fonseca, Valeria Morbidoni, Elisa Baschiera, Chiara Frasson, Ludovic Pelosi, Bérengère Rascalou, Maria Andrea Desbats, María Alcázar-Fabra, José Julián Ríos, Alicia Sánchez-García, Giuseppe Basso, Placido Navas, Fabien Pierrel, Gloria Brea-Calvo, Leonardo Salviati
Oxidative Medicine and Cellular Longevity, 2019, 2019, pp.1-11. ⟨10.1155/2019/3904905⟩. ⟨hal-02323996⟩
Journal articles
Plasticity of Promoter-Core Sequences Allows Bacteria to Compensate for the Loss of a Key Global Regulatory Gene
Otmane Lamrabet, Jacqueline A Plumbridge, Mikaël Martin, Richard Lenski, Dominique Schneider, Thomas Hindré
Molecular Biology and Evolution, 2019, 36 (6), pp.1121-1133. ⟨10.1093/molbev/msz042⟩. ⟨hal-02283119⟩
Journal articles
A Two-Enzyme Adaptive Unit within Bacterial Folate Metabolism
A.F. Schober, A.D. Mathis, C. Ingle, J.O. Park, Lin Chen, J. D. Rabinowitz, Ivan Junier, Olivier Rivoire, K.A. Reynolds
Cell Reports, 2019, 27 (11), pp.3359-3370.e7. ⟨10.1016/j.celrep.2019.05.030⟩. ⟨hal-02283154⟩
Journal articles
Changes in Intrinsic Antibiotic Susceptibility during a Long-Term Evolution Experiment with Escherichia coli
Otmane Lamrabet, Mikaël Martin, Richard Lenski, Dominique Schneider
mBio, 2019, 10 (2), ⟨10.1128/mBio.00189-19⟩. ⟨hal-02283128⟩
Journal articles
Ubiquinone Biosynthesis over the Entire O2 Range: Characterization of a Conserved O2-Independent Pathway
Ludovic Pelosi, Chau-Duy-Tam Vo, Sophie Saphia Abby, Laurent Loiseau, Bérengère Rascalou, Mahmoud Hajj Chehade, Bruno Faivre, Mathieu Goussé, Clothilde Chenal, Nadia Touati, Laurent Binet, David Cornu, Cameron David Fyfe, Marc Fontecave, Frédéric Barras, Murielle Lombard, Fabien Pierrel
mBio, 2019, 10 (4), ⟨10.1128/mBio.01319-19⟩. ⟨hal-02183791⟩
Journal articles
Reducing the ionizing radiation background does not significantly affect the evolution of Escherichia coli populations over 500 generations
Nathanael Lampe, Pierre Marin, Marianne Coulon, Pierre Micheau, Lydia Maigne, David Sarramia, Fabrice Piquemal, Sébastien Incerti, David Biron, Camille Ghio, Télesphore Sime-Ngando, Thomas Hindré, Vincent Breton
Scientific Reports, 2019, 9 (1), pp.14891. ⟨10.1038/s41598-019-51519-9⟩. ⟨hal-02337251⟩
Journal articles
Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling
Bilal El houdaigui, Raphaël Forquet, Thomas Hindré, Dominique Schneider, William Nasser, Sylvie Reverchon, Sam Meyer
Nucleic Acids Research, 2019, 47 (11), pp.5648-5657. ⟨10.1093/nar/gkz300⟩. ⟨hal-02127001⟩
Journal articles
A Soluble Metabolon Synthesizes the Isoprenoid Lipid Ubiquinone
Mahmoud Hajj Chehade, Ludovic Pelosi, Cameron David Fyfe, Laurent Loiseau, Bérengère Rascalou, Sabine Brugière, Katayoun Kazemzadeh, Chau-Duy-Tam Vo, Lidia Ciccone, Laurent Aussel, Yohann Couté, Marc Fontecave, Frédéric Barras, Murielle Lombard, Fabien Pierrel
Cell Chemical Biology, 2019, 26 (4), pp.482-492.e7. ⟨10.1016/j.chembiol.2018.12.001⟩. ⟨hal-02071798⟩
Journal articles
Non-linear frequency-dependent selection promotes long-term coexistence between bacteria species
Noémie Harmand, Valentine Federico, Thomas Hindre, Thomas Lenormand
Ecology Letters, 2019, 22, pp.1192-1202. ⟨10.1111/ele.13276⟩. ⟨hal-02099952⟩
Journal articles
Structural and functional studies of the metalloregulator Fur identify a promoter-binding mechanism and its role in Francisella tularensis virulence
J. Pérard, S. Nader, M. Levert, L Arnaud, P. Carpentier, C. Siebert, F. Blanquet, C. Cavazza, P. Renesto, D. Schneider, M. Maurin, Jacques Covès, S. Crouzy, Isabelle Michaud-Soret
Communications Biology, 2018, 1 (1), ⟨10.1038/s42003-018-0095-6⟩. ⟨hal-02975690⟩
Patents
Method for the in vitro detection of strains of Legionella pneumophila resistant to antibiotics
Max Maurin, Dominique Schneider, Lubana Shadoud, Sophie Jarraud, Jean Francois Timsit, Jerome Etienne
France, Patent n° : US 10106858 B2 - US Patent App. 15/564,105. 2018. ⟨hal-02283240⟩
Conference papers
Evolving Living Technologies-Insights from the EvoEvo project
Guillaume Beslon, Santiago F Elena, Paulien Hogeweg, Dominique Schneider, Susan Stepney
SSBSE 2018 - 10th Symposium on Search-Based Software Engineering, Sep 2018, Montpellier, France. pp.46-62, ⟨10.1007/978-3-319-99241-9_2⟩. ⟨hal-01882636⟩
Journal articles
Oral administration of viable Bifidobacterium pseudolongum strain Patronus modified colonic microbiota and increased mucus layer thickness in rat
Irène Mangin, Flore Marques Dossou-Yovo, Christophe Lévêque, Marie-Vincent Dessoy, Olivier Sawoo, Antonia Suau, Philippe Pochart
FEMS Microbiology Ecology, 2018, 94 (11), ⟨10.1093/femsec/fiy177⟩. ⟨hal-01980169⟩
Journal articles
High-content imaging assay to evaluate Toxoplasma gondii infection and proliferation: A multiparametric assay to screen new compounds
Bastien Touquet, Léonie Pelissier, Pierre Cavailles, Wei Yi, Valeria Bellini, Corinne Mercier, Marie-France Cesbron-Delauw, Ahcène Boumendjel, Delphine Aldebert
PLoS ONE, 2018, 13 (8), pp.e0201678. ⟨10.1371/journal.pone.0201678⟩. ⟨hal-02007242⟩
Journal articles
Robust Frankia phylogeny, species delineation and intraspecies diversity based on Multi-Locus Sequence Analysis (MLSA) and Single-Locus Strain Typing (SLST) adapted to a large sample size
Adrien C Pozzi, Hector Bautista-Guerrero, Sophie S. Abby, Aude P Herrera-Belaroussi, Danis Abrouk, Philippe Normand, Frédéric Menu, Maria P Fernandez
Systematic and Applied Microbiology, 2018, 41 (4), pp.311-323. ⟨10.1016/j.syapm.2018.03.002⟩. ⟨hal-02313880⟩
Journal articles
Universal and idiosyncratic characteristic lengths in bacterial genomes
Ivan Junier, Paul Frémont, Olivier Rivoire
Physical Biology, 2018, 15 (3), pp.035001. ⟨10.1088/1478-3975/aab4ac⟩. ⟨hal-01972786⟩
Patents
Implantable intestinal reactor
Philippe Cinquin, Dominique Schneider, Max Maurin, Donald K Martin, Sarra El Ichi, Abdelkader Zebda, Jean-Pierre Alcaraz, Fabian Reche, Patrick Tuvignon, Jacques Thélu, Audrey Legouëllec, Bertrand Toussaint
France, Patent n° : US20180078746A1. 2018. ⟨hal-02010238⟩
Journal articles
Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder.
Sophie S. Abby, Eduardo P C Rocha
Methods in Molecular Biology, 2018, Bacterial protein secretion systems, 1615, pp.1-21. ⟨10.1007/978-1-4939-7033-9_1⟩. ⟨hal-01677379⟩
Journal articles
Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome
Sophie S. Abby, Michael Melcher, Melina Kerou, Mart Krupovic, Michaela Stieglmeier, Claudia Rossel, Kevin Pfeifer, Christa Schleper
Frontiers in Microbiology, 2018, 9, pp.28. ⟨10.3389/fmicb.2018.00028⟩. ⟨hal-01702026⟩
HAL publications access
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