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Publications
BCM Team's publications
HAL publications access
Journal articles
Using high-throughput sequencing for investigating intra-host hepatitis C evolution over long retrospective periods
A. Caporossi, O. Kulkarni, M. Blum, V. Leroy, Patrice Morand, Sylvie Larrat, O. François
Infection, Genetics and Evolution, 2019, 67, pp.136-144. ⟨hal-01996548⟩
Book sections
Set-Based Analysis for Biological Modeling
Thao Dang, Tommaso Dreossi, Eric Fanchon, Oded Maler, Carla Piazza, Alexandre Rocca
Automated Reasoning for Systems Biology and Medicine, 2019, 978-3-030-17296-1. ⟨hal-02273714⟩
Journal articles
Certified Roundoff Error Bounds using Bernstein Expansions and Sparse Krivine-Stengle Representations
Victor Magron, Alexandre Rocca, Thao Dang
IEEE Transactions on Computers, 2019, 68 (7), pp.953-966. ⟨10.1109/TC.2018.2851235⟩. ⟨hal-01956817⟩
Book sections
Modeling the functional coupling between 3D chromatin organization and epigenome
Cédric Vaillant, Daniel Jost
Modeling the 3D conformation of genomes, 2019. ⟨hal-02386050⟩
Journal articles
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions
M. Sivade, D. Alonso-López, M. Ammari, G. Bradley, N. Campbell, A. Ceol, G. Cesareni, C. Combe, J. de Las Rivas, N. Del-Toro, J. Heimbach, H. Hermjakob, I. Jurisica, M. Koch, L. Licata, R. Lovering, J. Lynn, B. Meldal, G. Micklem, S. Panni, P. Porras, S. Ricard-Blum, B. Roechert, L. Salwinski, A. Shrivastava, J. Sullivan, Nicolas Thierry-Mieg, Y. Yehudi, K. van Roey, S. Orchard
BMC Bioinformatics, 2018, 19 (1), ⟨10.1186/s12859-018-2118-1⟩. ⟨hal-01877988⟩
Journal articles
Are comorbidities associated with long-term survival of lung cancer? A population-based cohort study from French cancer registries
A. Seigneurin, P. Delafosse, B. Tretarre, A.S. Woronoff, M. Velten, P. Grosclaude, A.V. Guizard, B. Lapôtre-Ledoux, S. Bara, F. Molinié, M. Colonna
BMC Cancer, 2018, 18 (1), ⟨10.1186/s12885-018-5000-7⟩. ⟨hal-02272374⟩
Journal articles
CRELD1 is an evolutionarily-conserved maturational enhancer of ionotropic acetylcholine receptors
Manuela d'Alessandro, Magali Richard, Christian Stigloher, Vincent Gache, Thomas Boulin, Janet Richmond, Jean-Louis Bessereau
eLife, 2018, 7, ⟨10.7554/eLife.39649⟩. ⟨hal-02009626⟩
Journal articles
Consistent head up cardiopulmonary resuscitation haemodynamics are observed across porcine and human cadaver translational models
J.C. Moore, Joe Holley, Nicolas Segal, M.C. Lick, Jose Labarere, R.J. Frascone, K.W. Dodd, A.E. Robinson, Charles Lick, Lauren Klein, Andrew Ashton, Angela Mcarthur, Adamantios Tsangaris, Anna Makaretz, Mike Makaretz, Guillaume Debaty, P.E. Pepe, K.G. Lurie
Resuscitation, 2018, 132, pp.133-139. ⟨10.1016/j.resuscitation.2018.04.009⟩. ⟨hal-02070656⟩
Journal articles
Evaluation of ceftriaxone prescriptions in the emergency department of a university hospital: an urgent need for improvement and alternative therapy
Stéphane Gennai, Stéphanie Ortiz, Bastien Boussat, Patrice François, Patricia Pavèse
European Journal of Clinical Microbiology and Infectious Diseases, 2018, 37 (11), pp.2063-2068. ⟨10.1007/s10096-018-3339-y⟩. ⟨hal-02272346⟩
Journal articles
Incidence of prostate cancer and net survival by grade in a geriatric population: A population-based study in a French administrative entity from 1991 to 2013
Alexandre Bellier, Marc Colonna, Patricia Delafosse, Arnaud Seigneurin
Cancer Epidemiology, 2018, 56, pp.60-66. ⟨10.1016/j.canep.2018.07.007⟩. ⟨hal-02272398⟩
Journal articles
VarExp: estimating variance explained by genome-wide GxE summary statistics
Vincent Laville, A.R. Bentley, Florian Privé, Xiaofeng Zhu, Jim Gauderman, T.W. Winkler, Mike Province, D.C. Rao, H. Aschard
Bioinformatics, 2018, 34 (19), pp.3412-3414. ⟨10.1093/bioinformatics/bty379⟩. ⟨hal-02272064⟩
Journal articles
Whole-exome sequencing identifies mutations in FSIP2 as a recurrent cause of multiple morphological abnormalities of the sperm flagella
Guillaume Martinez, Zine-Eddine Kherraf, Raoudha Zouari, Selima Fourati Ben Mustapha, Antoine Saut, Karin Pernet-Gallay, Anne Bertrand, Marie Bidart, Jean Pascal Hograindleur, Amir Amiri-Yekta, Mahmoud Kharouf, Thomas Karaouzène, Nicolas Thierry-Mieg, Denis Dacheux-Deschamps, Véronique Satre, Melanie Bonhivers, Aminata Touré, Christophe Arnoult, Pierre Ray, Charles Coutton
Human Reproduction, 2018, 33 (10), pp.1973 - 1984. ⟨10.1093/humrep/dey264⟩. ⟨hal-01877993⟩
Journal articles
Targeted temperature management in the ICU: Guidelines from a French expert panel
Alain Cariou, Jean-François Payen, Karim Asehnoune, Gérard Audibert, Astrid Botte, Olivier Brissaud, Guillaume Debaty, Sandrine Deltour, Nicolas Deye, Nicolas Engrand, Gilles Francony, Stephane Legriel, Bruno Levy, Philippe Meyer, Jean-Christophe Orban, Sylvain Renolleau, Bernard Vigué, Laure de Saint Blanquat, Cyrille Mathien, Lionel Velly
Anaesthesia Critical Care & Pain Medicine, 2018, 37 (5), pp.481-491. ⟨10.1016/j.accpm.2017.06.003⟩. ⟨hal-02070707⟩
Theses
Statistical Methods to Identify Local Adaptation in Continuous and Admixed Populations
Helena Martins
Populations and Evolution [q-bio.PE]. Université Grenoble Alpes, 2018. English. ⟨NNT : 2018GREAS022⟩. ⟨tel-02384722⟩
Journal articles
Reconstruction automatique de formulaires d’enquête médicale sur la culture de sécurité des patients par une méthode de factorisation matricielle bayésienne
B. Don Bosco Diatta, Papa Ngom, Bastien Boussat, Olivier François
Journal de la Société Française de Statistique, 2018, 159 (2), pp.111-127. ⟨hal-02272001⟩
Poster communications
Dimension reduction adapted to paleogenomics
Séverine Liégeois, Olivier François, Flora Jay
Paris-Saclay Junior Conference on Data Science and Engineering, Sep 2018, Orsay, France. ⟨hal-01978650⟩
Journal articles
Classification based on extensions of LS-PLS using logistic regression: application to clinical and multiple genomic data
Caroline Bazzoli, Sophie Lambert-Lacroix
ion to clinical and multiple genomic data. BMC Bioinformatics, 2018, 19 (1), ⟨10.1186/s12859-018-2311-2⟩. ⟨hal-01405101v3⟩
Journal articles
A Homozygous Ancestral SVA-Insertion-Mediated Deletion in WDR66 Induces Multiple Morphological Abnormalities of the Sperm Flagellum and Male Infertility.
Zine-Eddine Kherraf, Amir Amiri-Yekta, Denis Dacheux, Thomas Karaouzène, Charles Coutton, Marie Christou-Kent, Guillaume Martinez, Nicolas Landrein, Pauline Le Tanno, Selima Fourati Ben Mustapha, Lazhar Halouani, Marrakchi Ouafi, Mounir Makni, Habib Latrous, Mahmoud Kharouf, Karine Pernet-Gallay, Hamid Gourabi, Derrick R Robinson, Serge Crouzy, Michael Blum, Nicolas Thierry-Mieg, Aminata Touré, Raoudha Zouari, Christophe Arnoult, Melanie Bonhivers, Pierre F. Ray
American Journal of Human Genetics, 2018, 103 (3), pp.400-412. ⟨10.1016/j.ajhg.2018.07.014⟩. ⟨hal-01863586⟩
Journal articles
Efficient analysis of large-scale genome-wide data with two R packages: bigstatsr and bigsnpr
Florian Privé, Hugues Aschard, Andrey Ziyatdinov, Michael Blum
Bioinformatics, 2018, 34 (16), pp.2781 - 2787. ⟨10.1093/bioinformatics/bty185⟩. ⟨hal-01858710⟩
Journal articles
Experience feedback committees: A way of implementing a root cause analysis practice in hospital medical departments
Patrice François, André Lecoanet, Alban Caporossi, Anne-Marie Dols, Arnaud Seigneurin, Bastien Boussat
PLoS ONE, 2018, 13 (7), pp.e0201067. ⟨10.1371/journal.pone.0201067⟩. ⟨hal-02270779⟩
HAL publications access
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