Publications

Publications dans des journaux internationaux à comité de lecture :

in press
- Antoniadis, A. Gijbels, I. and Lambert-Lacroix S. Penalized estimation in additive varying coefficient models using grouped regularization. Statistical Papers, in press.
- Bahadoran, C., Guiol, H., Ravishankar, K and Saada E.
Euler hydrodynamics for attractive particle systems in random environment.
Annales de l’Institut Henri Poincaré - Probablités et Statistiques.
- Cracowski JL, Chabot F, Labarère J, Faure P, Degano B, Schwebel C, Chaouat A, Reynaud-Gaubert M, Cracowski C, Sitbon O, Yaici A, Simonneau G, Humbert M Proinflammatory cytokine levels are linked with death in puklmonary arterial hypertension. European Respiratory Journal, in press
- Duforet-Frebourg N, Blum MGB, Nonstationary patterns of Isolation-by-distance : inferring measures of local genetic differentiation with Bayesian kriging. Evolution, in press.
- Frichot E, Mathieu F, Trouillon T, Bouchard G, François O. Fast and efficient estimation of individual ancestry coefficients, in press.

2014
- Ben Khelifa M, Coutton C, Zouari R, Karaouzene T, Rendu J, Bidart M, Yassine S, Pierre V, Delaroche J, Hennebicq S, Grunwald D, Escalier D, Pernet-Gallay K, Jouk PS, Thierry-Mieg N, Toure A, Arnoult C, Ray PF (2014) Mutations in DNAH1, which Encodes an Inner Arm Heavy Chain Dynein, Lead to Male Infertility from Multiple Morphological Abnormalities of the Sperm Flagella. Am J Hum Genet. 94(1):95-104.

2013
- Arenas M, François O, Currat M, Ray N, Excoffier L (2013) Influence of admixture and Paleolithic range contractions on current European diversity gradients. Molecular Biology and Evolution 30 : 57-61.
- Blum MGB, Nunes MA, Prangle D, Sisson SA (2013) A comparative review of dimension reduction methods in approximate Bayesian computation. Statistical Science 28 : 189-208
- Coutton C, Abada F, Karaouzene T, Sanlaville D, Satre V, Lunardi J, Jouk PS, Arnoult C, Thierry-Mieg N, Ray PF (2013) Fine Characterisation of a Recombination Hotspot at the DPY19L2 Locus and Resolution of the Paradoxical Excess of Duplications over Deletions in the General Population. PLoS Genetics 9(3):e1003363.
- Frichot E, Schoville SD, Bouchard G, François O (2013) Testing associations between loci and environmental gradients using latent factor mixed models. Molecular Biology and Evolution 30 (7):1687-1699.
- Gattepaille LM, Jakobsson M, Blum MGB (2013) Inferring population size changes with sequence and SNP data : lessons from human bottlenecks. Heredity 110:409-419.
- Giacofci M, Lambert-Lacroix S, Marot G, Picard F (2013) Wavelet-based clustering for mixed-effects functional models in high dimension. Biometrics, 69:31-40.
- Guiol H, Machado FP, Schinazi RB (2013) On a link between a species survival time in an evolution model and the Bessel distributions. Brazilian Journal of Probability and Statistics 27 (2) : 201-209.
- Jay F, Sjödin P, Sjöstrand AE, Jakobsson M, Blum MGB (2013) Anisotropic isolation by distance : the main
orientations of human genetic differentiation. Molecular Biology and Evolution 30:513-525.
- Joost S, Vuilleumier S, Jensen J, Schoville SD, Leempoel K, Widmer I, Stucki S, Melo de Lima C, Roland J, Manel S (2013) Uncovering the genetic basis of adaptive change : on the intersection of landscape genomics and theoretical population genetics. Molecular Ecology 22 : 3659–3665.
- Schoville SD, Uchifune T, Machida R (2013) Colliding fragment islands transport independent lineages of endemic rock-crawlers (Grylloblattodea : Grylloblattidae) in the Japanese archipelago. Molecular Phylogenetics and Evolution 66 : 915-927.
- Venetz C, Labarère J, Jiménez D, Aujesky D (2013) White blood cell count and mortality in patients with acute pulmonary embolism. American Journal of Hematology 88:677-681.

2012

- Ben Khelifa, M, Coutton C, Blum MGB + 25 co-authors and Ray PF (2012) Identification of a new recurrent Aurora kinase C mutation in both European and African men with macrozoospermia. Human reproduction 27:3337-3346
- Belle L, Labarère J, Fourny M, Drouet E, Mulak G, Dujardin JJ, Vilarem D, Bonnet P, Hanssen M, Simon T, Ferrières J, Danchin N (2012) Quality of care for myocardial infarction at academic and nonacademic hospitals. American Journal of Medicine 125:365-373.
- Blum MGB, François O (2012) Comment on « Constructing summary statistics for approximate Bayesian computation : semi-automatic approximate Bayesian computation » by Paul Fearnhead and Dennis Prangle. Journal of the Royal Statistical Society Series B (Statistical Methodology) 74:454.
- Boshnakov G, Lambert-Lacroix S (2012) Periodic Levinson-Durbin Algorithm for entropy maximization. Computational Statistics and Data Analysis 56:15-24.
- Carvunis AR, Rolland T, Wapinski I, Calderwood MA, Yildirim MA, Simonis N, Charloteaux B, Hidalgo CA, Barbette J, Santhanam B, Brar GA, Weissman JS, Regev A, Thierry-Mieg N, Cusick ME, Vidal M (2012) Proto-genes and de novo gene birth. Nature 487(7407):370-374.
- Cracowski JL, Labarère J, Renversez JC, Degano B, Chabot F, Humbert M (2012) Plasma levels of high-density lipoprotein cholesterol are not associated with survival in pulmonary arterial hypertension. American Journal of Respiratory and Critical care Medicine 186:107-108.
- Cracowski JL, Degano B, Chabot F, Labarère J, Schwedhelm E, Monneret D, Iuliano L, Schwebel C, Chaouat A, Reynaud-Gaubert M, Faure P, Maas R, Renversez JC, Cracowski C, Sitbon O, Yaïci A, Simonneau G, Humbert M (2012) Independent association of urinary F2-isoprostanes with survival in pulmonary arterial hypertension. Chest 142:869-876.
- Csilléry K, François O, Blum MGB (2012) abc : an R package for Approximate Bayesian Computation (ABC). Methods in Ecology and Evolution 3 : 475-479.
- Dao Thi MU, Trocmé C, Montmasson MP, Fanchon E, Toussaint B, Tracqui P (2012) Investigating metalloproteinases MMP-2 and MMP-9 mechanosensitivity to feedback loops involved in the regulation on in vitro angiogenesis by endogenous mechanical stresses. Acta Biotheoretica, in press.
- Frichot E, Schoville SD, Bouchard G, François O (2012) Correcting principal component maps for effects of spatial autocorrelation in population genetic data. Frontiers in Genetics : Applied Genetic Epidemiology 3 : 254.
- Harris ESJ, Cao S, Schoville SD, Dong C, Wang W, Jian Z, Zhao Z, Eisenberg DM and Clardy J (2012) Selection for high oridonin yield in the Chinese medicinal plant Isodon (Lamiaceae) using a combined phylogenetics and population genetics approach. PLoS One 7(11) : e50753.
- Jay F, Manel S, Alvarez N, Durand EY, Thuiller W, Holderegger R, Taberlet P, François O (2012) Forecasting changes in population genetic structure of alpine plants in response to global warming. Molecular Ecology 21 (10):2354-2368.
- Labarère J, Schuetz P, Renaud B, Claessens YE, Albrich W, Mueller B (2012) Validation of a clinical prediction model for early admission to the intensive care unit of patients with pneumonia. Academic Emergency Medicine. 19:993-1003.
- Labarère J, Belle L, Fourny M, Vanzetto G, Debaty G, Delgado D, Brallet J, Vallet B, Danchin N ; USIC 2000 ; FAST-MI (2012) Regional system of care for ST-segment elevation myocardial infarction in the Northern Alps : a controlled pre- and postintervention study. Archives of cardiovascular diseases 105:414-423.
- Labarère J, Gelbert-Baudino N, Laborde L, Baudino F, Durand M, Schelstraete C, François P (2012) Determinants of 6-month maternal satisfaction with breastfeeding experience in a multicenter prospective cohort study. Journal of Human Lactation 28:203-10.
- Renaud B, Schuetz P, Claessens YE, Labarère J, Albrich W, Mueller B (2012) Proadrenomedullin improves Risk of Early Admission to ICU score for predicting early severe community-acquired pneumonia. Chest 142:1447-1454.
- Renaud B, Brun-Buisson C, Santin A, Coma E, Noyez C, Fine MJ, Yealy DM, Labarère J (2012) Outcomes of early, late, and no admission to the intensive care unit for patients hospitalized with community-acquired pneumonia. Academic Emergency Medicine 19:294-303.
- Scherz N, Labarère J, Aujesky D, Méan M (2012) Elevated admission glucose and mortality in patients with acute pulmonary embolism. Diabetes Care 35:25-31.
- Schlebusch CM, Skoglund P, Sjödin P, Gattepaille LM, Hernandez D, Jay F,Li S, De Jongh M, Singleton A, Blum MGB, Soodyall H, Jakobsson M (2012) Genomic variation in seven Khoe-San groups reveals adaptation and complex African history. Science 338 : 374-379.
- Schoville SD, Bonin A, François O, Lobreaux S, Melodelima C, Manel S (2012) Adaptive genetic variation on the landscape : Methods and cases. Annual Review of Ecology, Evolution, and Systematics 43 : 23-43.
- Schoville SD (2012) Three new species of Grylloblatta Walker (Insecta : Grylloblattodea : Grylloblattidae), from southern Oregon and northern California. Zootaxa 3412 : 42–52.
- Schoville SD, Lam AD, Roderick GK (2012) A range-wide genetic bottleneck overwhelms landscape heterogeneity and local abundance in shaping genetic patterns of an alpine butterfly (Lepidoptera : Pieridae : Colias behrii). Molecular Ecology 21 : 4242-4256.
- Schoville SD, Roderick GK, Kavanaugh DH (2012) Testing the “Pleistocene species pump” in alpine habitats : lineage diversification of flightless ground beetles (Coleoptera : Carabidae : Nebria) in relation to altitudinal zonation. Biological Journal of Linnean Society 107 : 95-111.
- Schoville SD, Flowers JM, Burton RS (2012) Diversifying selection underlies the origin of allozyme polymorphism at the Phosphoglucose-isomerase locus in Tigriopus californicus. PLoS One 7(6) : e40035.
- Sjödin P, Sjöstrand AE, Jakobsson M, Blum MGB (2012) Resequencing data provide no evidence for a human bottleneck in Africa during the penultimate glacial period. Molecular Biology and Evolution 29:1851-1860.
Xin X, Boone C, Thierry-Mieg N (2012) Mapping interactomes with high coverage and efficiency using the shifted transversal design. Methods Mol Biol 812:147-59.

2011

- Arabidopsis Interactome Mapping Consortium (2011) Evidence for network evolution in an Arabidopsis interactome map. Science 333(6042):601-7.
- Aracena J, Fanchon E, Montalva M, Noual M (2011) Combinatorics on update digraphs in Boolean networks. Discrete Applied Mathematics 159:401-409.
- Belle L, Fourny M, Reynaud T, Hammer L, Vanzetto G, Labarère J (2011) Efficacy and safety of glycoprotein IIb/IIIa receptor antagonists for patients undergoing percutaneous coronary intervention within 12 hours of fibrinolysis. Catheterism and Cardiovascular Interventions 78:376-384.
- Blum MGB, Jakobsson M (2011) Deep divergences of human gene trees and models of human origins. Molecular Biology and Evolution 28:889-898.
- Chautard E, Fatoux-Ardore M, Ballut L, Thierry-Mieg N, Ricard-Blum S (2011) MatrixDB, the extracellular matrix interaction database. Nucleic Acids Res 39 : D235-40.
- Donzé A, Fanchon E, Gattepaille L, Maler O, Tracqui P (2011) Robustness Analysis and Behavior Discrimination in Enzymatic Reaction Networks PLoS ONE 6(9) : e24246.
- Donzé J, Labarère J, Méan M, Jiménez D, Aujesky D (2011) Prognostic importance of anaemia in patients with acute pulmonary embolism. Thrombosis and Haemostasis 106:289-295.
- Fouquereau J, Laval G, Labarère J (2011) Effectiveness of a supportive care form for family physicians. Bulletin du Cancer 98:1165-1172.
- Fourny M, Lucas AS, Belle L, Debaty G, Casez P, Bouvaist H, François P, Vanzetto G, Labarère J (2011) Inappropriate Dispatcher Decision for EMS Users with Acute Myocardial Infarction. American Journal of Emergency Medicine 29:37-42.
- François O, Laval G (2011) Deviance Information Criteria for Model Selection in Approximate Bayesian Computation. Statistical Applications in Genetics and Molecular Biology 10(1) : 33.
- Guiol H, Machado FP, Schinazi RB (2011) A stochastic model of evolution. Markov Processes and Related Fields 17:253-258.
- Henry C, Pavese P, Blanc M, Labarère J, Leclercq P, Brion JP (2011) HIV infection and diabetes : experience and quality of life in patients with two chronic diseases. Presse Médicale 40:e463-470.
- Jay F, François O, Blum MGB (2011) Predictions of Native American population structure using linguistic covariates in a hidden regression framework. PLoS ONE 6:e16227.
- Jay F, Blum MGB, Frichot E, François O (2011) Modèles à variables latentes en génétique des populations. Journal de la Société Française de Statistique 152 (3):3-20.
- Labarère J, Gelbert-Baudino N, Laborde L, Arragain D, Schelstraete C, François P (2011) CD-ROM-based program for breastfeeding mothers. Maternal and Child Nutrition 7:263-272.
- Lambert-Lacroix S, Zwald L (2011) Robust regression through the Huber’s criterion and adaptive lasso penalty. Electronic Journal of Statistics, 5, 1015-1053.
- Leblois R, Kuhls K, François O, Schonian G, Wirth T (2011) Guns, germs and dogs : On the origin of Leishmania chagasi. Infection, Genetics and Evolution 11:1091-1095.
- Mukhtar MS, Carvunis AR, Dreze M, Epple P, Steinbrenner J, Moore J, Tasan M, Galli M, Hao T, Nishimura MT, Pevzner SJ, Donovan SE, Ghamsari L, Santhanam B, Romero V, Poulin MM, Gebreab F, Gutierrez BJ, Tam S, Monachello D, Boxem M, Harbort CJ, McDonald N, Gai L, Chen H, He Y ; European Union Effectoromics Consortium, Vandenhaute J, Roth FP, Hill DE, - Ecker JR, Vidal M, Beynon J, Braun P, Dangl JL. (2011) Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science 333(6042):596-601.
- Norris V, Zemirline A, Amar P, Audinot JN, Ballet P, Ben Jacob E, Bernot G, Beslon G, Cabin A, Fanchon E, Giavitto J-L, Glade N, Greussay P, Grondin Y, Foster JA, Hutzler G, Kepes F, Michel O, Molina F, Signorini J, Stano P, Thierry AR (2011) Computing with bacterial constituents, cells and populations : from bioputing to bactoputing. Theory Biosciences 130:211-228.
- Seigneurin A, Exbrayat C, Labarère J, Delafosse P, Poncet F, Colonna M (2011) Association of diagnostic work-up with subsequent attendance in a breast cancer screening program for false-positive cases. Breast Cancer Research and Treatment 127:221-228.
- Seigneurin A, François O, Labarère J, Oudeville P, Monlong J, Colonna M (2011) Overdiagnosis for non-progressive cancer detected by screening mammography : stochastic simulation study with calibration to population based registry data. British Medical Journal (BMJ) 343:d7011.
- Sellier E, Labarère J, Gennai S, Bal G, François P, Pavese P (2011) Compliance with recommendations and clinical outcomes for formal and informal infectious disease specialist consultations. European Journal of Clinical Microbiology and Infectious Diseases 30:887-894.
- Sjödin P, François O (2011) Wave-of-advance models of the diffusion of the Y chromosome haplogroup R1b1b2 in Europe. PLoS ONE 6(6) : e21592.
- Vitrat-Hincky V, François P, Labarère J, Recule C, Stahl JP, Pavese P (2011) Appropriateness of blood culture testing parameters in routine practice. Results from a cross-sectional study. European Journal of Clinical Microbiology and Infectious Diseases 30:533-9.

2010

- Antoniadis, A., Bigot, J., Lambert-Lacroix S. (2010) Peaks detection and alignment for mass spectrometry data . Journal de la Société Française de Statistique 151(1) : 17-37.
- Bahadoran, C., Guiol, H., Ravishankar, K. and Saada E. (2010). Strong hydrodynamic limit for attractive particle systems on Z. Electronic Journal of Probability 15 : 1-43.
- Blum MGB (2010) Approximate Bayesian Computation : a nonparametric perspective. Journal of the American Statistical Association 105 : 1178-1182.
- Blum MGB, Tran V-C (2010) HIV with contact tracing : a case study in Approximate Bayesian Computation. Biostatistics 11 : 644-660.
- Blum MGB, François O (2010) Non-linear regression models for Approximate Bayesian Computation. Statistics and Computing 20 : 63-73.
- Brouste, A., Istas, J., Lambert-Lacroix S. (2010) On simulation of manifold indexed fractional Gaussian fields. Journal of Statistical Software, vol 4, n 36, 1-14.
- Casez P, Labarère J, Sevestre MA, Haddouche M, Courtois X, Mercier S, Lewandowski E, Fauconnier J, Francois P, Bosson JL (2010) ICD-10 hospital discharge diagnosis codes were sensitive for identifying pulmonary embolism but not deep vein thrombosis. Journal of Clinical Epidemiology 63:790-797.
- Chautard E, Thierry-Mieg N, Ricard-Blum S (2010) Interaction networks as a tool to investigate the mechanisms of aging. Biogerontology 11(4):463-73.
- Corblin F, Fanchon E, Trilling L (2010) Applications of a formal approach to decipher discrete genetic networks, BMC Bioinformatics 11 : 21.
- Corblin F, Bordeaux L, Fanchon E, Hamadi Y, Trilling L (2010) Connections and Integration with SAT Solvers : A Survey and a Case Study in Computational Biology. IN P. van Hentenryck and M. Milano, Hybrid Optimization : The 10 Years of CPAIOR, Berlin : Springer-Verlag, Optimization and Its Applications, 425-463.
- Csilléry K, Blum MGB, Gaggiotti O, François O (2010) Approximate Bayesian Computation (ABC) in practice. Trends in Ecology and Evolution 25 : 410-418.
- Durand E, François O (2010) Probabilistic analysis of a genealogical model of animal group patterns. Journal of Mathematical Biology 60 : 451-468.
François O, Durand E (2010) Spatially explicit Bayesian clustering models in population genetics. Molecular Ecology Resources (Special Issue on Spatial Genetics) 10 : 773-784.
- François O, Currat M, Ray N, Han E, Excoffier L, Novembre J (2010) Principal component analysis under population genetic models of range expansion and admixture. Molecular Biology and Evolution 27 : 1257-1268.
Francois P, Desrumeaux A, Cans C, Pin I, Pavese P, Labarère J (2010) Prevalence and risk factors of suppurative complications in children with pneumonia. Acta Paediatrica 99:861-866.
- Johnson SA, Stevens SM, Woller SC, Lake E, Donadini M, Cheng J, Labarère J, Douketis JD (2010) Risk of deep vein thrombosis following a single negative whole-leg compression ultrasound. A systematic review and meta-analysis. Journal of the American Medical Association (JAMA) 303:438-445.
- Sambourg L, Thierry-Mieg N (2010) New insights into protein-protein interaction data lead to increased estimates of the S. cerevisiae interactome size. BMC Bioinformatics 11(1):605.
- Scherz N, Labarère J, Méan M, Ibrahim SA, Fine MJ, Aujesky DA (2010) Prognostic importance of hyponatremia in patients with acute pulmonary embolism. American Journal of Respiratory and Critical Care Medicine 182:1178-1183.
- Segelbacher G, Cushman SA, Epperson BK, Fortin MJ, François O et al. Applications of landscape genetics in conservation biology : Concepts and challenges. Conservation Genetics 11 : 375-385.
- Sellier E, Pavese P, Gennai S, Stahl JP, Labarère J, Francois P (2010) Factors and outcomes associated with physicians’ adherence to recommendations of infectious disease consultations for inpatients. Journal of Antimicrobial Chemotherapy 65:156-162.
- Sevestre MA, Labarère J, Casez P, Bressollette L, Haddouche M, Pernod G, Quéré I, Bosson JL (2010) Outcomes for inpatients with normal findings on whole-leg ultrasonography. A multicenter prospective cohort study. American Journal of Medicine 123:158-165.

Conférences données à l’invitation du Comité d’organisation dans un congrès national ou international.

2013

- Blum MGB (2012) Bayesian Principal Component Analysis for detecting genes involved in Darwinian selection. Statistiktage 2013. Vienne, Autriche, Octobre 2013

2012

- Blum MGB (2012) Approximate Bayesian Computation for human population genetics. SMPGD 2012 Statistical methods for post-genomic data. Lyon, janvier 2012
- François O (2012) Landscape Genetics Distributed Graduate Seminar. U. Toronto, Printemps 2012.
- Thierry-Mieg N (2012) Combinatorial group testing with the Shifted Transversal Design, applications to biology. Department of Computer Science and Mathematical Informatics Seminar, Nagoya University, July 2012, Nagoya, Japan.
- Thierry-Mieg N (2012) Mapping protein-protein interactions with the Shifted Transversal Design. Invited talk, the second Institute of Mathematical Statistics - Asia Pacific Rim Meeting (IMS-APRM2012), TCP12, July 2012, Tsukuba, Japan.
- Thierry-Mieg N (2012) Shifted Transversal Design smart-pooling for high-throughput biology. Invited talk, IMA Workshop on Group Testing Designs, Algorithms, and Applications to Biology, Feb 2012, Minneapolis, USA.
2011
- Blum MGB (2011) Interrogating models of human origins with resequencing data. CNRS Paleogenomics summer school. 17-21 Octobre, E.-M. Geigl T. Grange, Cargèse, France.
- Blum MGB (2011) Deep divergences of human gene trees and models of human origins. Seminar series of the Mathematical Genetics and Bioinformatics Groups. 21 Juin 2011, Oxford, UK
- Blum MGB (2011) Non-linear regression approaches in Approximate Bayesian Computation. Approximate Bayesian Computation in London. 5 Mai 2011, Londres, UK.
- Blum MGB (2011) Deep divergences of human gene trees and models of human origins. Seminar series, Graduate School of Population Genetics, 11 Janvier 2011, Vienna Autriche.
- François O, MGB Blum (2011) Statistique bayésienne et génétique des populations. Atelier CIMPA-UCAD-IRD. P. NGom E. Pardoux, 14 – 18 février 2011, Dakar Sénégal.
- François O (2011) Deviance information criterion for model selection in ABC. Workshop on Filtering, MCMC and ABC. March 28-29, Lille, France.
- François O (2011) Latent variable models in population genetics. Workshop on “Challenging problems in statistical learning”, March 17-18, 2011, Grenoble, France.
- François O (2011) Forecasting changes in population genetic structure of Alpine plants in response to global warming. International Conference in Landscape Genetics (Keynote Speaker). 10-12 October, Mammal Research Institute, Bialowieza, Poland, 2011.
- Thierry-Mieg N (2011) Interactome networks : construction, visualization and analysis. Third International Bioinformatics Software School (IBSS 2011), Avril 2011, Tanger, Maroc.

2010

- François O (2010) Approximate Bayesian Computation (ABC) in practice. Conférence plénière. Journée Jacques Neveu et Journées MAS 2010, 31 Août – 3 septembre 2010, Bordeaux, France.
- François O (2010) Statistique bayésienne en génétique des populations. Cours invité. Journées de Statistique du Sud, 23 – 25 juin 2010, Mèze, France.
- François O (2010) Landscape Genetics. Invited lectures, Uppsala University, April 10-15 2010, Sweden.
- Guiol H (2010) Un modèle d’évolution stochastique. Conférence. Journée Jacques Neveu et Journées MAS 2010, 31 Août – 3 septembre 2010, Bordeaux, France.
- Blum MGB (2010) Statistique bayésienne en génétique des populations. Journée satellite "Bioinformatique & Biodiversité" à JOBIM 2010, 6 Septembre 2010, Montpellier, France.

Communications avec actes dans un congrès international.

2013

- Bouvier J, Coquery N, Grand S, Tropres I, Chechin D, LeBas JF, François O, Krainik A, Barbier EL (2013) Evaluation of a multiparamteric qBOLD approach in patients with brain tumors. In : 21rst Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2013), 20-26 April, Salt Lake City, USA, p. 1753.
- Duforet-Frebourg N, MGB Blum, Bayesian matrix factorization for outlier detection : an application in population genetics. Bayesian Young Statistician meeting 2013, CNR IMATI, June 5-6 2013, Milano, Italy
- Kulkarni O, François O, Morand P, Blum MGB, Larrat S (2013) Estimation of genetic diversity in NS3-protease region of Hepatitis C Virus using 454 pyrosequencing. In : European Human Genetics Conference 2013, Paris, France, 8-11 June, p. 392.
- Frichot E, Schoville SD, Bouchard G, François O (2013) A unified framework for inferring population genetic structure and gene-environment associations. Workshop NextGen. October 15-18 2013. Piacenza, Italy.
- Sambourg L, Thierry-Mieg N (2013) Filtering systematic errors in next-generation genotype calls : stranding matters.
SeqBio 2013 Workshop, Nov 25-26 2013, Montpellier, France, p. 40.

2012

- Blum MGB (2012) A comparison of dimension reduction methods in approximate Bayesian computation. International Society for Bayesian Analysis 2012 Meeting. Kyoto, June 2012
- Blum MGB (2012) Approximate Bayesian Computation : theory, algorithms and applications. Mathematical and Computational Evolutionary Biology. June 18-22, Etoile, France.
- Blum MGB (2012) Major axes of genetic differentiation in humans. Conférence CNRS Jacques Monod. Theoretical and empirical advances in evolutionary genomics. Roscoff, France.
- Corblin F, Fanchon E, Trilling L, Chaouiya C and Thieffry D (2012) Automatic inference of regulatory and dynamical properties from incomplete gene interaction and expression data. IPCAT (Int. Conf. on Information Processing in Cells and Tissues), Cambridge, UK. Lecture Notes in Computer Science, 7223, 25-30, 2012.
- Frichot E, Schoville SD, Bouchard G, François O (2012) A unified framework for inferring population genetic structure and gene-environment associations. In : Theoretical and empirical advances in evolutionary genomics, Jacques Monod International Conference. March 31-April 4, Roscoff, France.
- Frichot E, Schoville SD, Bouchard G, François O (2012) A unified framework for inferring population genetic structure and gene-environment associations. Mathematical and Computational Evolutionary Biology. June 18-22, Etoile, France.

2011

- François O (2011) Forecasting changes in population genetic structure of Alpine plants in response to global warming. International Conference in Landscape Genetics. 10-12 October, Mammal Research Institute, Bialowieza, Poland.
- Francois O (2011) Deviance information criterion for model selection in ABC. Workshop Filtering, MCMC, ABC. March 28-29 March, Lille, 2011.
- Glade N, Elena A, Corblin F, Fanchon E, Demongeot J, Ben Amor H (2011) Determination, optimization and taxonomy of regulatory networks : The example of Arabidopsis thaliana flower morphogenesis. IEEE Proceedings, Workshop BLSMC 2011 (Bioinformatics and Life Science Modeling and Computing) AINA 2011 (Advanced Information Networking and Applications), Singapore.
- Guiol H (2011) Species survival time in an evolution model. 35th Conference on Stochastic Processes and their Applications, June 19th-24th, Oaxaca, Mexico.
- Jay F, François, O Blum MGB (2011) Predictions of Native American population structure using linguistic covariates in a hidden regression framework. PopGroup44 Population Genetics Group. 5-7 January 2011. University of Hull, UK.
- Peysselon F, R. Salza, M. Fatoux-Ardore, E. Chautard, N. Thierry-Mieg and S. Ricard-Blum (2011) Interaction Networks and Intrinsic Disorder : Another Way to Investigate Extracellular Matrix Functions. JOBIM 2011, June 2011, Paris.

2010

- Blum MGB (2010) Choosing the Summary Statistics and the Acceptance Rate in Approximate Bayesian Computation. In COMPSTAT 2010-Proceedings in Computational Statistics, Saporta G, Lechevallier Y eds, pp.47-56 Springer, Physica Verlag
- Ben Amor H, Corblin F, Fanchon E, Trilling L, Demongeot J, Glade N (2010) Méthodes formelles pour les réseaux de régulations biologiques. Présentation orale à la 3e Conférence Internationale de la SFBT (Société Francophone de Biologie Théorique), Tunis, 17 - 19 juin 2010.
- François O (2010) Principal component analysis under population genetic models of range expansion and admixture. Meeting of the Society of Molecular Biology and Evolution 2010, July 2-4 2010, Lyon, France.
- Blum MGB (2010) HIV with contact tracing : a case study in Approximate Bayesian Computation. 9th international conference on operations research 2010, February 22-26, La Havane, Cuba, 2010.
- Montalva Medel M, Aracena J, Fanchon E, Noual M (2010) Problèmes combinatoire liés à des questions de modélisation de réseaux discrets. Présentation orale à la 3e Conférence Internationale de la SFBT (Société Francophone de Biologie Théorique), Tunis, 17 - 19 juin 2010.
- Sambourg L, Thierry-Mieg N (2010) New insights into protein-protein interaction data lead to increased estimates of the S. cerevisiae interactome size. IPG (Integrative Post-Genomics), november 25-26 2010, Lyon, France.
ACTN : Communications avec actes dans un congrès national.

2013

- Blum MGB Bayesian principal component analysis for detecting genes under selection. Journée Charles Hermite – Inférence Ancestrale et Relations Évolutives en Biologie. Septembre 05 Nancy.
- Blum MGB, Duforet-Frebourg N Bayesian robust Principal Component Analysis for detecting genes involved in local adaptation. Software and statistical methods for Population Genetics (SSMPG 2013), June 17-21, Aussois, France
- Duforet-Frebourg N, MGB Blum (2013) Non-Stationary patterns of isolation-by-distance : inferring measures of local genetic differentiation with Bayesian kriging. Software and statistical methods for Population Genetics (SSMPG 2013), June 17-21, Aussois, France
- Frichot E, Schoville SD, Bouchard G, François O (2013) A unified framework for inferring population genetic structure and gene-environment associations. Statistical Methods for Post-Genomic Data, January 23-24 2014, Paris, France.
- Frichot E, Schoville SD, Bouchard G, François O (2013) Inference of admixture coefficients using sparse matrix factorization algorithms. Software and Statistical Methods for Population Genetics (SSMPG 2013), June 17-21, Aussois, France.

Communications par affiche dans un congrès international ou national.

2014

- Duforet-Frebourg N, MGB Blum (2014) : Genome scans for local adaptation : a Bayesian factor model. MCMSki IV, January 6-8 2014. Chamonix, France, 2014.
- Frichot E, Schoville SD, Bouchard G, François O (2014) A unified framework for inferring population genetic structure and gene-environment associations. MCMSki IV, January 6-8 2014. Chamonix, France, 2014.

2013

- Duforet-Frebourg N, MGB Blum (2012) Genome scans for local adaptation : a Bayesian factor model. Mathematical and Computational Evolutionary Biology MCEB 2013, May 27-31, Etoile, France.
- Frichot E, Schoville SD, Bouchard G, François O (2013) Inference of admixture coefficients using sparse nonnegative matrix factorization algorithms. Mathematical and Computational Evolutionary Biology MCEB 2013, May 27-31, Etoile, France.
- Frichot E, Mathieu F, Trouillon T, Bouchard G, François O (2013) Fast Inference of Admixture Coefficients Using Sparse Non-negative Matrix Factorization Algorithms. (Poster presentation) Annual Meeting of the Society of Molecular Biology and Evolution SMBE 2013, July 7-11 2013, Chicago, USA.
- Kulkarni O, François O, Morand P, Blum MGB, Larrat S (2013) Estimation of genetic diversity in NS3-protease region of Hepatitis C Virus using 454 pyrosequencing. Infectious Disease Genomics and Global Health conference, 16-18 October, Cambridge UK.

2012

- Frichot E, Schoville SD, Bouchard G, François O (2012) Landscape genomic tests for associations between loci and environmental gradients. (Poster presentation) Annual Meeting of the Society of Molecular Biology and Evolution SMBE 2012, June 23-26, Dublin, Ireland.
- Duforet-Frebourg N, M.G.B. Blum (2012) Isolation-by-distance revisited : estimating local autocorrelation patterns (Poster presentation) Mathematical and Computational Evolutionary Biology. June 2012, Hameau de l’Etoile, France.
- Duforet-Frebourg N, M.G.B. Blum (2012) Isolation-by-distance revisited : estimating local autocorrelation patterns (Poster presentation) Theoretical and Empirical advances in evolutionary genomics. March 31 – April 4, 2012, Roscoff, France.
- Frichot E, S. Schoville, G. Bouchard, O. François (2012) Correcting principal components of spatial population genetic variation under isolation by distance models. (Poster presentation) Theoretical and Empirical advances in evolutionary genomics. March 31 – April 4, 2012, Roscoff, France.
- Schoville, S.D. 2012 Jacques Monod Conference, Roscoff. A range-wide genetic bottleneck overwhelms landscape heterogeneity and local abundance in shaping genetic patterns of an alpine butterfly (Lepidoptera : Pieridae : Colias behrii).

2011

- Carvunis AR, I Wapinski, M Yildirim, N Simonis, B Charloteaux, C Hidalgo, M Cusick, N Thierry-Mieg, M Vidal (2011). Proto-genes. 2011 CSHL meeting on Systems Biology : Networks. Poster, March 2011, Cold Spring Harbour Laboratory, USA.
- Csilléry K, O François, MGB Blum (2011) abc : an R-package for Approximate Bayesian Computation. Approximate Bayesian Computation in London. 5 Mai 2011, Londres, UK.
- Schoville, S.D., T. Uchifune, and R. Machida (2011) Colliding Fragment Islands Transport Independent Lineages Of Endemic Rock-Crawlers (Grylloblattidea : Grylloblattidae) In The Japanese Archipelago, SMBE’11 Conference, Kyoto, Japan.
- Seigneurin A, François O, Labarere J, Oudeville P, Monlong J, Exbrayat C, Colonna M (2011) Estimation du surdiagnostic dans le cadre du depistage du cancer du sein dans le departement de l’Isère. Journees de la recherche médicale du 15 et 16 avril 2011, Grenoble, France.

2010

- Blum MGB (2010) Meeting of the Society of Molecular Biology and Evolution 2010, poster session. July 2-4 2010, Lyon, France.
- Corblin F, Fanchon E, Mobilia N, Trilling L (2010) A non monotonic approach for a declarative analysis of discrete genetic regulation networks. Integrative Post-Genomics, Lyon, 25-26 November 2010.
- Jay F, François O, Blum M (2010) Role of languages in shaping population genetic structure. Meeting of the Society of Molecular Biology and Evolution 2010. July 2-4 2010, Lyon, France.
- Sambourg L, Thierry-Mieg N. Estimating the size of the S. cerevisiae interactome. (2010) Poster session. Jobim, september 7-9 2010, Montpellier, France

Directions d’ouvrages ou de revues.

- Fanchon E. : Co-editor of a special issue of Acta Biotheoretica.
- Lambert-Lacroix S. : éditeur associé pour le Journal de la Société Française de Statistique depuis 2009 ; membre du comité éditorial de la collection Pratique R, Springer depuis 2009 ; Co-direction de la collection Pratique Statistique des Presses Universitaires de Rennes depuis 2012.
- François O. Associate Editor of the International Journal of Molecular Sciences “Special issue in Molecular Ecology” ; Associate Editor of ISRN Biomathematics
- François O, LP Waits. Assignment and Clustering Methods in Landscape Genetics. In "Landscape genetics : Concepts, methods, applications", N. Balkenhol and LP Waits Editors, Wiley New York 2014 in press.

Organisation de colloques et de symposia

2013

- Blum MGB (2013) Organisation de la première édition de l’école d’été « Software and Statistical Methods for Population Genetics (SSMPG 2013) », Juin 17-21 2013
- Blum MGB (2011) Organisation de la journée annuelle de l’Institut des Systèmes Complexes « approches bayésiennes d’inférence statistique », IXXI, Grenoble, Octobre 2013

2012

- Blum MGB (2011) Organisation de la journée annuelle de l’Institut des Systèmes Complexes, IXXI, Grenoble, Novembre 2012

2011

- Blum MGB (2011) Organisation de la journée annuelle de biodiversité et bioinformatique, 80 pers, 29 Juin 2011
- Blum MGB (2011) Organisation de la journée annuelle de l’Institut des Systèmes Complexes, IXXI, Grenoble, Mai 2011
- Fanchon E (2011) Co-organisateur du 31e séminaire de la Société Francophone de Biologie Théorique (SFBT), Autrans, mai 2011.
- Fanchon E (2011) Co-organisateur du workshop international Toward Systems Biology, Grenoble, juin 2011.

Thèses et HdR

2013

- Sambourg L (2013). Décrypter les données omiques : importance du contrôle qualité. Application au cancer de l’ovaire. Thèse de doctorat de l’Université de Grenoble. Soutenue le 18/12/2013.
- Thierry-Mieg N (2013). Smart-pooling and interactomes. Habilitation à diriger des recherches délivrée par l’Université de Grenoble. Soutenue le 25/01/2013.

2012

- Blum MGB (2012). Statistiques bayésiennes et applications en génétique des populations. Habilitation à diriger des recherches délivrée par l’Université de Grenoble. Soutenue le 03/12/2012.

2011

- Jay F. (2011). Méthodes bayésiennes en génétique des populations : relations entre structure génétique des populations et environnement. Thèse de doctorat de l’Université de Grenoble. Soutenue le 14/11/2011.
- Carvunis AR (2011) Des protéines et de leurs interactions aux principes évolutifs des systèmes biologiques. Thèse de doctorat de l’Université de Grenoble. Soutenue le 26/01/2011
- Seigneurin A. (2011). Evaluation du dépistage du cancer du sein par mammographie : estimation du surdiagnostic, de la participation des femmes après un résultat faux positif, et de l’incidence des cancers de l’intervalle. Thèse de doctorat de l’Université de Grenoble. Soutenue le 03/10/2011.

Prix et distinctions

2010

- Durand E. Prix de Thèse de Grenoble INP 2010.
- Carvunis A-R. Médaille de l’Université Joseph Fourier 2010.


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